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Iraq says more than 3,000 Syrians are among the ISIL-linked detainees transferred to one of its prisons by US military.

More than 5,000 ISIL-linked (ISIS) detainees have been transferred from Syrian jails to a prison in neighbouring Iraq so far, according to Iraq’s Ministry of Justice.

In comments to the Iraqi News Agency on Friday, ministry spokesperson Ahmed Laibi said the transfers and ongoing detention of the prisoners had been carried out at the request of an international coalition led by the United States to combat ISIL, of which Iraq is a key member.

In separate comments on the sidelines of the Munich Security Conference, Iraqi Foreign Minister Fuad Hussein gave a lower figure, telling Reuters that about 3,000 ISIL-linked detainees had been transferred.

He told the news agency that the process was ongoing and that Baghdad was in discussions with various countries about repatriating their nationals who had been transferred.

Iraq would need more ⁠financial assistance to ⁠deal with the intake, he said, adding that there had been a recent ⁠uptick in ISIL activity in Syria.

The US military has been transporting thousands of ISIL-linked prisoners from jails and detention centres previously run by the Kurdish-led Syrian Democratic Forces (SDF) in northeast Syria.

The transfers have come as control of the prisons has been handed over to the Syrian government, amid a push by Damascus to assert its authority over the full extent of a country still fragmented in the wake of a brutal war.

Deadly clashes with SDF forces broke out amid the Syrian army’s advance in recent weeks, including in and around key prison sites, resulting in some ISIL detainees escaping and raising fears the armed group could exploit any security vacuum to regroup.

A ceasefire has since been struck between the government and the SDF.

Detainees mostly Syrian nationals

Laibi, the Iraqi Justice Ministry spokesperson, said that of the 5,064 ISIL detainees transferred so far, more than 3,000 were Syrian, while at least 270 were Iraqi.

He said the detainees were being held in a single prison, in a section separated from other prisoners.

The detainees would all be investigated and prosecuted under Iraqi law, he said, while the responsibility for feeding the thousands of detainees was being handled by the international coalition, rather than Iraq.

Last month, lawyers for a group of French ISIL suspects who had been transported by the US military from Syria to Iraqi prisons in an earlier series of transfers claimed the inmates had been subjected to “torture and inhumane treatment” there.

Damascus becomes US’s main anti-ISIL partner

The US military has previously said up to 7,000 people with alleged ISIL links could be transferred to Iraqi-controlled facilities.

US Admiral Brad Cooper, the head of US forces in the Middle East, said last month that facilitating the secure transfer of detainees was critical to preventing mass breakouts that could pose a direct threat to the US and regional security.

The statement came shortly after the US special envoy to Syria said that Washington’s main partner against ISIL in Syria would be the Syrian government, rather than the SDF, which had held that position for years.

The shift followed Syria – under new President Ahmed al-Sharaa, the former leader of the armed group Hayat Tahrir al-Sham, who was once deemed a “Specially Designated Global Terrorist” by the US – joining the anti-ISIL coalition in November.

US departs Syrian base

The ongoing transfers of the detainees from Syria have come as the US military reduces its presence in the country, where it has conducted operations against ISIL for years.

On Thursday, Syrian ⁠forces ⁠announced they had taken control of the al-Tanf military base, a strategic garrison near the border with Iraq and Jordan, following the withdrawal of US forces.

Cooper, the commander of US forces in the Middle East, said the departure was “part of a deliberate and conditions-based transition”, and that US forces remained “poised to respond to any [ISIL] threats that arise in the region as we support partner-led efforts” to prevent the group’s resurgence.

While ISIL was largely defeated in 2017 in Iraq and in Syria two years later, sleeper cells still carry out attacks in both countries.

Syria’s defence ministry says its forces have taken control of the strategic base amid coordination with the US.

Syrian ⁠forces ⁠have taken control of the strategic al-Tanf military base near the border with Iraq and Jordan, the Syrian defence ministry has said, amid the withdrawal of a longstanding United States troop presence at the base.

The ministry said in a statement on Thursday that Syrian Arab Army units had taken control of al-Tanf, securing the base and its surroundings, “through coordination between the Syrian and American sides”.

Army units had “begun deploying along the Syrian-Iraqi-Jordanian” border nearby, the ministry said, while border guards would be deployed in the coming days.

The base was established during Syria’s civil war in 2014 as a ‌key hub for operations by the global coalition against ISIL (ISIS), which at the time controlled large areas of Syria and Iraq until the group was vanquished in 2017.

The US withdrawal from the base comes months after Syrian President Ahmed al-Sharaa, the former leader of the armed group Hayat Tahrir al-Sham, who the US once deemed a “Specially Designated Global Terrorist”, joined the anti-ISIL coalition in November.

The US military has not officially commented on the pullout, but Trump has expressed an interest in withdrawing US troops from Syria since his first term.

Syrian government expands control

The pullout also follows ⁠a US-brokered deal to integrate the Kurdish-led Syrian Democratic Forces – a key US partner in the fight against ISIL – into Syrian government institutions, an agreement the US hailed as a major step towards national unity and ⁠reconciliation in Syria.

Last month, as al-Sharaa’s government pushed to expand its control over the country, Syrian government forces captured large areas of previously Kurdish-held territory in northeast Syria, amid deadly clashes with the SDF.

A ceasefire was later struck between the sides.

Amid the advance of Syrian forces, the US military has been transferring thousands of ISIL prisoners from jails previously run by the SDF in northeastern Syria, as the facilities were transferred to Syrian government control.

US drawdown

While the size of the US deployment in Syria has fluctuated over the years, with precise figures often unclear due to the classified nature of many operations, a Pentagon announcement in July 2025 said there were about 1,500 American soldiers in Syria.

The size of the deployment currently stands at 900, The Associated Press reported.

Earlier this month, an Al Jazeera correspondent on the ground reported that US military personnel appeared to be drawing down their presence from watchtowers surrounding a military installation in the al-Shaddadi area in northeastern Hasakah province.

Soldiers were also seen lowering the US flag from one tower, while equipment used to manage aircraft takeoffs and landings at the base’s airstrip was no longer visible.

The US carried out a round of “large-scale” attacks against ISIL in Syria in January following an ambush that killed two US soldiers and a civilian interpreter in the city of Palmyra in December.

French lawyers for suspected ISIL members transferred from Syria say the men are suffering inhumane treatment in Iraqi jails.

Lawyers for a group of French nationals accused of being part of ISIL (ISIS) and transferred by the United States from Syria to prisons in Iraq say the inmates have been subjected to “torture and inhumane treatment” there.

French media reported on Wednesday that lawyers Marie Dose and Matthieu Bagard visited the accused men in Baghdad during a recent visit and said their clients had been subjected to ill-treatment in detention in Iraq.

The abuse – including being slapped, strangled, handcuffed behind their backs “with a pulley system” and threatened with rape with iron bars – was inflicted to “make them confess to their presence in Iraq” during their alleged time in ISIL, which would give the Iraqi justice system jurisdiction to try them for their alleged crimes, the lawyers said.

The lawyers were quoted as saying the accused ISIL members “assured us that they had not been in Iraq before their arrest in Syria and their transfer to Baghdad”.

Deaths in Syrian custody

During their two-day visit, which began on Sunday, the lawyers, acting on behalf of the families of the prisoners, said they met 13 of the 47 French nationals alleged to be ISIL members who are being held in Iraq.

The 13 men said they were arrested from 2017 to March 23, 2019, the day ISIL lost control of Baghouz, Syria, ending its final hold on territory.

They said they were imprisoned in a jail in northeastern Syria under challenging conditions, in which four French inmates died due to illness and “severe deficiencies”, and they were interrogated on numerous occasions by the FBI, CIA and other agencies believed to represent France and the European Union.

US military transfers

The lawyers made the comments amid the transfer of large numbers of ISIL detainees from prisons and detention camps in Syria to Iraq on US military flights.

The wave of transfers was being carried out after a recent advance by Syrian government forces in the northeast against the Kurdish-led Syrian Democratic Forces (SDF), which the US trained and supported to fight ISIL. The SDF has controlled camps and prisons holding suspected ISIL members for years.

The escape of ISIL detainees during the fighting in cities like al-Shaddadi sparked concerns that they could regroup and pose a renewed security threat, prompting an arrangement for the US military to run flights transferring the prisoners to Iraqi jails.

The Associated Press news agency reported on Sunday that 275 prisoners had been transferred so far while the Anadolu Agency reported that thousands were planned to be transferred under the agreement.

Iraqi Prime Minister Mohammed Shia al-Sudani on Sunday said the transfer of the ISIL detainees was “temporary” and urged countries to repatriate their nationals.

In a separate statement on Sunday, Iraq’s highest judicial body said it would prosecute the transferred detainees after a meeting of top security and political officials.